Circadian expression profiles database. It integrated expression profiles of different tissues through mircroarray and RNA-Seq.
It integrating circadian genomics, transcriptomics, proteomics, and metabolomics of several tissues. This resource provides a systems-wide picture taken from a high-resolution lens, allowing researchers to analyze metabolism with a broader perspective and to generate hypotheses on how levels of metabolites may change under various physiological settings.
The CGDB (Circadian Gene DataBase) is an online resource containing over 72,800 genes in more than 148 organisms that exhibit (or may exhibit) daily oscillation at the transcript level.
Periodicity detection algorithm for unevenly spaced circadian gene expression data.
An integrated R package to evaluate periodicity in large scale data. It incorporates ARSER, JTK_CYCLE and Lomb-Scargle to conveniently evaluate periodicity in time-series data.
An efficient nonparametric algorithm for detecting rhythmic components in genome-scale data sets.
Analyzing circadian expression data by harmonic regression based on autoregressive spectral estimation.
A websever developed by Regulatory Biology Laboratory, Salk Institute, La Jolla. This database features data from 4 independent experiments including WT adlib, WT tRF, WT fast/refed and CrydKO adlib and tRF.
Circadian epigenome browser
A browser integrated different types of sequencing data sets including RNA-Seq, ChIP-seq (histone modifications), BS-Seq(DNA methylation) of different time points.
Data Collection and Analysis for Circadian Biology. It is used for data analysis of circadian related behaver.