circAtlas 2.0 An integrated resource of circRNAs in vertebrates.


circRNA software
Tools Title Links Versions PMID
CIRICIRI: an efficient and unbiased algorithm for de novo circular RNA identification.
CIRI2Circular RNA identification based on multiple seed matching.
CIRI-ASComprehensive identification of internal structure and alternative splicing events in circular RNAs.
CIRI-fullReconstruction of full-length circular RNAs enables isoform-level quantification.
CIRIquantAccurate quantification of circular RNAs identifies extensive circular isoform switching events.
Related Database
Database Descriptions
GTRD  A database on gene transcription regulation.
miRBase  A searchable database of published miRNA sequences and annotation.
GENCODE  GENCODE reference annotation for the human and mouse genomes.
Ensembl  A database produces genome databases for vertebrates and other eukaryotic species.
OMA  A method and database for the inference of orthologs among complete genomes.
UCSC  A broad collection of vertebrate and model organism assemblies and annotations, along with a large suite of tools for viewing, analyzing and downloading data.
ChIPBase  An open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-coding genes from ChIP-seq data.
ENCODE  Encyclopedia of DNA Elements.
circad  A manually curated database of circular RNAs associated with diseases.
circR2Disease  A manually curated database for experimentally supported circular RNAs associated with various diseases.
circRNADisease  A manually curated database of experimentally supported circRNA-disease associations.